Preheat oven to 325°F (160°C). Lightly grease a 12-cup muffin pan and dust with flour.
In a large bowl, whisk together all-purpose flour, almond flour, quinoa, baking powder, cinnamon, ginger, baking soda, and salt.
In another bowl, whisk eggs, yogurt, milk, and honey until smooth.
Fold the wet mixture into the dry ingredients until just combined.
Gently stir in raspberries.
Divide batter evenly into muffin cups.
Bake the Very Berry Quinoa Muffins for 15–20 minutes, or until a toothpick inserted in the center comes out clean.
Cool in the pan for 5 minutes, then transfer to a wire rack to cool completely.